Carbon atom ball diagrams in metabolomics experiments
Represent carbon atoms labeled in metabolic pathways If you've ever wondered how to create those metabolic maps that show the number of atoms labeled by a carbon isotope ( e.g., C-13 ), we'll show you how. But before you begin, you need to know a few important details. https://www.nature.com/articles/s41467-024-52538-5?fromPaywallRec=false What is the Exchange Rate? The Exchange Rate is a parameter that indicates the number of atoms exchanged between the uniformly carbon-labeled molecule to which your cells were initially exposed and the remaining fully or partially labeled metabolites detected in the Isotopic Profiling experiment, also called Isotopic Trace Analysis . In articles, the Average Exchange Rate is often represented in diagrams with filled or empty balls, with the filled balls representing the average number of labeled carbon atoms in the metabolite in question and the empty balls representing the average number of unlabeled carbon atoms for the same metabolite....